Get QuNex – Qu|Nex

Container Deployment

To obtain access to the QuNex container please register through the form below. After you complete your registration please follow the instructions outlined here: Quick Start for deploying the QuNex container.

QuNex Source Code

The QuNex suite is open source. For installation guidelines consult the Installing from source and dependencies Wiki.

QuNex Registration Form

First Name

Last Name

Your Initials

Your e-mail address:

Name of the institution

Position at this Institution

Country of the Institution

Type of institution which will use this software:

non-profit education/research

medical

commercial

If you are affiliated with a commercial institution describe intended use

Affiliated Department or Lab

Are you the Principal Investigator?

Yes

Your mailing address:

City

State/Province

Zip/Postal

Country

Select type of requested access

QuNex source code and Docker container access

QuNex Docker container access only

QuNex source code access only

Operating System/Platform

Estimated number of users of the software

(List 1 if you are only installing for yourself, otherwise please provide the estimate of the number of users )

Are you interested in collaborating on QuNex co-development?

Yes

Yale Privacy Policy

Yale University is committed to protecting your privacy.

Any information you voluntarily provide to us through a Yale University website, such as an email address, name, or phone number, will never be sold to other colleges, universities, non-profit organizations, or businesses.

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Contact information
If you have any questions about this privacy statement or the practices of this website, you may contact:
Yale University
Office of Public Affairs & Communications
203.432.1333

I have read & agree to the Yale Privacy Policy

I Accept the Yale Privacy Policy

QuNex Container License Agreement:

Quantitative Neuroimaging Environment & ToolboX (Qu|Nex) Container License Agreement (“AGREEMENT”)

Copyright (c) 2021 Respective contributors from:

Anticevic Lab, Yale University
Mind & Brain Lab, University of Ljubljana
Murray Lab, Yale University 

(collectively, “AUTHORS”).

By registering for downloads of the Quantitative Neuroimaging Environment and ToolboX (Qu|Nex) Container, you are hereby agreeing to the following terms and conditions for your and your authorized organization’s download and use of the Qu|Nex Container Layer software (“CONTAINER”). If you do not agree to these terms and conditions, please do not register, download or otherwise use the CONTAINER.  

While the suite of source code(s) for the Container is licensed and made available by AUTHORS free and open sourced under a GPL license (https://www.gnu.org/licenses/gpl-3.0.en.html), the CONTAINER itself and the associated code(s) are and shall remain proprietary to the AUTHORS. As between you and the AUTHORS, the AUTHORS retain ownership of any and all intellectual property and proprietary rights in and to the CONTAINER and the AUTHORS reserve all rights that are not expressly granted to you under this AGREEMENT.

Permission for use of the CONTAINER is hereby granted without charge for non-commercial research purposes only. You are not permitted under this AGREEMENT to use this CONTAINER commercially. Use for which any financial return is received shall be defined as commercial use, and includes, but is not limited to: (1) integration of all or part of the CONTAINER into a product or service for sale or license to third parties by you or on your or your organization’s behalf; or (2) use of the CONTAINER or any derivative of it, in whole or in part, for research with an aim of developing software products or services for sale or license to a third party; or (3) use of the CONTAINER or any derivative of it, in whole or in part, for research with an aim of developing non-software products or services for sale or license to a third party; or (4) use of any portion of the CONTAINER to provide any service to any other individual or  organization from which payment is received. If you are interested in using the CONTAINER commercially, please contact either: Yale University Office of Cooperative Research http://ocr.yale.edu/ or University of Ljubljana Intellectual Property Office intelektualna.lastnina@uni-lj.si to negotiate a commercial use license.

NO PART OF THE CONTAINER MAY BE MODIFIED, REPRODUCED, DISTRIBUTED, TRANSMITTED OR TRANSFERRED, including any copies of this CONTAINER or DERIVATIVES of this CONTAINER, to others outside your organization without specific prior written permission from the AUTHORS. Other than the rights expressly granted herein, as between you and AUTHORS, the AUTHORS retain all rights, title, and interest in and to the CONTAINER. You may be held legally responsible for any copyright infringement that is caused or encouraged by your failure, act and/or omission to abide by these terms and conditions.

If you provide use of the CONTAINER to other users within your authorized organization or unit, they also must comply with all the terms of this AGREEMENT and you and your organization are fully responsible for ensuring that such terms are adhered to by them. You must not remove or alter any copyright or other proprietary notices in the CONTAINER.

The CONTAINER has been designed for non-commercial research purposes only and has not been reviewed or approved by any federal, state or local governmental or regulatory agency. YOU ACKNOWLEDGE AND AGREE THAT CLINICAL APPLICATIONS ARE NEITHER RECOMMENDED NOR ADVISED.

You agree to indemnify the AUTHORS, their respective institutions and the employees, officers, agents and/or representatives thereof (collectively, the “Indemnified Parties”) and hold the Indemnified Parties harmless from and against any and all claims, damages and liabilities asserted by third parties (including claims for negligence) which arise directly or indirectly from your or your organization’s use and/or distribution of the CONTAINER in any manner or form [or the sale of any products based on the CONTAINER].

THE CONTAINER IS PROVIDED HEREUNDER "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, TITLE, NON-INFRINGEMENT, AND FITNESS FOR A PARTICULAR PURPOSE ARE HEREBY EXPRESSLY DISCLAIMED. IN NO EVENT SHALL THE AUTHORS NOR ANY OF THE AUTHOR PARTIES BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS CONTAINER, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

You may publish papers and books using results produced using the CONTAINER provided by this AGREEMENT provided that you reference the appropriate citations to the AUTHORS.

None of the names, logos or trademarks of the AUTHORS, the CONTAINER, nor those of any of their respective institutions or affiliates, or any funding agency (collectively, “Author Parties”) may be used to endorse or promote your or your organization’s papers, books, results produced using the CONTAINER, or any other uses, statements or publications relating to the CONTAINER without specific prior written permission from the applicable party. You may not duplicate, copy, or reuse any portion of the look and feel or visual design of the CONTAINER or associated materials on this website without express written permission from the applicable party.

I have read & agree to the QuNex Container License terms

I Accept QuNex Container License Terms

FreeSurfer License Agreement

Version 1.0, February 2011

This Agreement covers contributions to and downloads from the FreeSurfer project ("FreeSurfer") maintained by The General Hospital Corporation, Boston MA, USA ("MGH"). Part A of this Agreement applies to contributions of software and/or data to FreeSurfer (including making revisions of or additions to code and/or data already in FreeSurfer). Part B of this Agreement applies to downloads of software and/or data from FreeSurfer. Part C of this Agreement applies to all transactions with FreeSurfer. If you distribute Software (as defined below) downloaded from FreeSurfer, all of the paragraphs of Part B of this Agreement must be included with and apply to such Software.

Your contribution of software and/or data to FreeSurfer (including prior to the date of the first publication of this Agreement, each a "Contribution") and/or downloading, copying, modifying, displaying, distributing or use of any software and/or data from FreeSurfer (collectively, the "Software") constitutes acceptance of all of the terms and conditions of this Agreement. If you do not agree to such terms and conditions, you have no right to contribute your Contribution, or to download, copy, modify, display, distribute or use the Software.

PART A. CONTRIBUTION AGREEMENT

License to MGH with Right to Sublicense ("Contribution Agreement")

1. As used in this Contribution Agreement, "you" means the individual contributing the Contribution to FreeSurfer and the institution or entity which employs or is otherwise affiliated with such individual in connection with such Contribution.

2. This Contribution Agreement applies to all Contributions made to FreeSurfer, including without limitation Contributions made prior to the date of first publication of this Agreement. If at any time you make a Contribution to FreeSurfer, you represent that (i) you are legally authorized and entitled to make such Contribution and to grant all licenses granted in this Contribution Agreement with respect to such Contribution; (ii) if your Contribution includes any patient data, all such data is de-identified in accordance with U.S. confidentiality and security laws and requirements, including but not limited to the Health Insurance Portability and Accountability Act (HIPAA) and its regulations, and your disclosure of such data for the purposes contemplated by this Agreement is properly authorized and in compliance with all applicable laws and regulations; and (iii) you have preserved in the Contribution all applicable attributions, copyright notices and licenses for any third party software or data included in the Contribution.

3. Except for the licenses granted in this Agreement, you reserve all right, title and interest in your Contribution.

4. You hereby grant to MGH, with the right to sublicense, a perpetual, worldwide, non-exclusive, no charge, royalty-free, irrevocable license to use, reproduce, make derivative works of, display and distribute the Contribution. If your Contribution is protected by patent, you hereby grant to MGH, with the right to sublicense, a perpetual, worldwide, non-exclusive, no-charge, royalty-free, irrevocable license under your interest in patent rights covering the Contribution, to make, have made, use, sell and otherwise transfer your Contribution, alone or in combination with any other code.

5. You acknowledge and agree that MGH may incorporate your Contribution into FreeSurfer and may make FreeSurfer available to members of the public on an open source basis under terms substantially in accordance with the Software License set forth in Part B of this Agreement. You further acknowledge and agree that MGH shall have no liability arising in connection with claims resulting from your breach of any of the terms of this Agreement.

6. YOU WARRANT THAT TO THE BEST OF YOUR KNOWLEDGE YOUR CONTRIBUTION DOES NOT CONTAIN ANY CODE THAT REQURES OR PRESCRIBES AN "OPEN SOURCE LICENSE" FOR DERIVATIVE WORKS (by way of non-limiting example, the GNU General Public License or other so-called "reciprocal" license that requires any derived work to be licensed under the GNU General Public License or other "open source license").

PART B. DOWNLOADING AGREEMENT

License from MGH with Right to Sublicense ("Software License")

1. As used in this Software License, "you" means the individual downloading and/or using, reproducing, modifying, displaying and/or distributing the Software and the institution or entity which employs or is otherwise affiliated with such individual in connection therewith. The General Hospital Corporation, Boston MA, USA ("MGH") hereby grants you, with right to sublicense, with respect to MGH's rights in the software, and data, if any, which is the subject of this Software License (collectively, the "Software"), a royalty-free, non-exclusive license to use, reproduce, make derivative works of, display and distribute the Software, provided that: (a) you accept and adhere to all of the terms and conditions of this Software License; (b) in connection with any copy of or sublicense of all or any portion of the Software, all of the terms and conditions in this Software License shall appear in and shall apply to such copy and such sublicense, including without limitation all source and executable forms and on any user documentation, prefaced with the following words: "All or portions of this licensed product (such portions are the "Software") have been obtained under license from The General Hospital Corporation and are subject to the following terms and conditions:" (c) you preserve and maintain all applicable attributions, copyright notices and licenses included in or applicable to the Software; (d) modified versions of the Software must be clearly identified and marked as such, and must not be misrepresented as being the original Software; and (e) you consider making, but are under no obligation to make, the source code of any of your modifications to the Software freely available to others on an open source basis.

2. The license granted in this Software License includes without limitation the right to (i) incorporate the Software into proprietary programs (subject to any restrictions applicable to such programs), (ii) add your own copyright statement to your modifications of the Software, and (iii) provide additional or different license terms and conditions in your sublicenses of modifications of the Software; provided that in each case your use, reproduction or distribution of such modifications otherwise complies with the conditions stated in this Software License.

3. This Software License does not grant any rights with respect to third party software, except those rights that MGH has been authorized by a third party to grant to you, and accordingly you are solely responsible for (i) obtaining any permissions from third parties that you need to use, reproduce, make derivative works of, display and distribute the Software, and (ii) informing your sublicensees, including without limitation your end-users, of their obligations to secure any such required permissions.

4. The Software has been designed for research purposes only and has not been reviewed or approved by the Food and Drug Administration or by any other agency. YOU ACKNOWLEDGE AND AGREE THAT CLINICAL APPLICATIONS ARE NEITHER RECOMMENDED NOR ADVISED. Any commercialization of the Software is at the sole risk of the party or parties engaged in such commercialization. You further agree to use, reproduce, make derivative works of, display and distribute the Software in compliance with all applicable governmental laws, regulations and orders, including without limitation those relating to export and import control.

5. The Software is provided "AS IS" and neither MGH nor any contributor to the software (each a "Contributor") shall have any obligation to provide maintenance, support, updates, enhancements or modifications thereto. MGH AND ALL CONTRIBUTORS SPECIFICALLY DISCLAIM ALL EXPRESS AND IMPLIED WARRANTIES OF ANY KIND INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL MGH OR ANY CONTRIBUTOR BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY ARISING IN ANY WAY RELATED TO THE SOFTWARE, EVEN IF MGH OR ANY CONTRIBUTOR HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. TO THE MAXIMUM EXTENT NOT PROHIBITED BY LAW OR REGULATION, YOU FURTHER ASSUME ALL LIABILITY FOR YOUR USE, REPRODUCTION, MAKING OF DERIVATIVE WORKS, DISPLAY, LICENSE OR DISTRIBUTION OF THE SOFTWARE AND AGREE TO INDEMNIFY AND HOLD HARMLESS MGH AND ALL CONTRIBUTORS FROM AND AGAINST ANY AND ALL CLAIMS, SUITS, ACTIONS, DEMANDS AND JUDGMENTS ARISING THEREFROM.

6. None of the names, logos or trademarks of MGH or any of MGH's affiliates or any of the Contributors, or any funding agency, may be used to endorse or promote products produced in whole or in part by operation of the Software or derived from or based on the Software without specific prior written permission from the applicable party.

7. Any use, reproduction or distribution of the Software which is not in accordance with this Software License shall automatically revoke all rights granted to you under this Software License and render Paragraphs 1 and 2 of this Software License null and void.

8. This Software License does not grant any rights in or to any intellectual property owned by MGH or any Contributor except those rights expressly granted hereunder.

PART C. MISCELLANEOUS

This Agreement shall be governed by and construed in accordance with the laws of The Commonwealth of Massachusetts without regard to principles of conflicts of law. This Agreement shall supercede and replace any license terms that you may have agreed to previously with respect to FreeSurfer.

I have read & agree to FreeSurfer License Agreement

I Accept FreeSurfer License Terms

FSL Software License

FSL Software License Version v6 2018

FMRIB Software Library, Release 6.0 (c) 2018, The University of Oxford
(the "Software")

The Software remains the property of Oxford University Innovation 
("the University").

The Software is distributed "AS IS" under this Licence solely for
non-commercial use in the hope that it will be useful, but in order
that the University as a charitable foundation protects its assets for
the benefit of its educational and research purposes, the University
makes clear that no condition is made or to be implied, nor is any
warranty given or to be implied, as to the accuracy of the Software,
or that it will be suitable for any particular purpose or for use
under any specific conditions. Furthermore, the University disclaims
all responsibility for the use which is made of the Software. It
further disclaims any liability for the outcomes arising from using
the Software.

The Licensee agrees to indemnify the University and hold the
University harmless from and against any and all claims, damages and
liabilities asserted by third parties (including claims for
negligence) which arise directly or indirectly from the use of the
Software or the sale of any products based on the Software.

No part of the Software may be reproduced, modified, transmitted or
transferred in any form or by any means, electronic or mechanical,
without the express permission of the University. The permission of
the University is not required if the said reproduction, modification,
transmission or transference is done without financial return, the
conditions of this Licence are imposed upon the receiver of the
product, and all original and amended source code is included in any
transmitted product. You may be held legally responsible for any
copyright infringement that is caused or encouraged by your failure to
abide by these terms and conditions.

You are not permitted under this Licence to use this Software
commercially. Use for which any financial return is received shall be
defined as commercial use, and includes (1) integration of all or part
of the source code or the Software into a product for sale or license
by or on behalf of Licensee to third parties or (2) use of the
Software or any derivative of it for research with the final aim of
developing software products for sale or license to a third party or
(3) use of the Software or any derivative of it for research with the
final aim of developing non-software products for sale or license to a
third party, or (4) use of the Software to provide any service to an
external organisation for which payment is received. If you are
interested in using the Software commercially, please contact Oxford
University Innovation ("OUI"), the technology transfer company of the
University, to negotiate a licence. Contact details are:
fsl@innovation.ox.ac.uk quoting Reference Project 9564, FSL.


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The Standard Space Atlases

The Cerebellum, Harvard-Oxford, JHU, Juelich, Striatum and Thalamus atlases, 
whilst not being the property of Oxford, are released under the terms of the
main FSL licence above, at the request of their owners. These atlases
should therefore not be used for commercial purposes; for such
purposes please contact the primary co-ordinator for the relevant
atlas:

Harvard-Oxford: steve@fmrib.ox.ac.uk
JHU: susumu@mri.jhu.edu
Juelich: S.Eickhoff@fz-juelich.de
Thalamus: behrens@fmrib.ox.ac.uk
Cerebellum: j.diedrichsen@bangor.ac.uk
Striatum: andri.tziortzi@gmail.com

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FSLView

FSLView sources are released under the terms of the GPLv2
(http://www.gnu.org/licenses/old-licenses/gpl-2.0.html). FSLView 
binaries use Qt (http://qt.nokia.com) which is released under LGPLv2.1.
The FSLView binaries are released under the GPL, with the added 
exception that we also give permission to link this program with the Qt
non-commercial edition, and distribute the resulting executable,
without including the source code for the Qt non-commercial edition in
the source distribution.

FSLView is distributed "AS IS" under this Licence in the hope that it
will be useful, but in order that the University as a charitable
foundation protects its assets for the benefit of its educational and
research purposes, the University makes clear that no condition is
made or to be implied, nor is any warranty given or to be implied, as
to the accuracy of the Software, or that it will be suitable for any
particular purpose or for use under any specific conditions.
Furthermore, the University disclaims all responsibility for the use
which is made of the Software. It further disclaims any liability for
the outcomes arising from using the Software.

I have read & agree to the FSL Software License Terms

I Accept FSL License Terms

Interest in commercial licensing options

I would like to receive further information about commercial licensing options for QuNex

I would like to receive further information about commercial licensing options for FSL

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